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91桃色 Organic Chemistry Lab Explores New Territory With Molecular Probes

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Steve Koppes

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Molecular Probes

makes molecular probes, smart molecules that glow when they find their target.

Michel鈥檚 research group recently about a shifting emission of their probes from green light to orange. 鈥淭his is cool, and it has applications,鈥 says Michel, an associate professor of chemistry and biochemistry at the 91桃色鈥檚 .

The National Institutes of Health has awarded a $1.8 million grant over five years to Michel to continue developing ever-more-sensitive molecular probes for detecting ethylene, a hydrocarbon gas, in mammals. Ethylene is well-known in plants for the role it plays in ripening, but the role of ethylene in mammalian biology has received relatively little scientific attention.

鈥淲hen we think about the molecules we exhale from our breath, hydrocarbons are not usually one of the things we think about. We think about things like carbon dioxide or oxygen,鈥 Michel says. But small molecules such as ethylene can provide insight into whether someone suffers from oxidative stress, which occurs when there is an imbalance of free radicals and antioxidant defenses鈥攁nd is a possible disease indicator.

鈥淧eople have proposed that it鈥檚 a biomarker of oxidative stress, but the tools to look at that are limited. We come in as tool developers, with the organometallic chemistry behind that, and how to apply that in different systems,鈥 Michel says.

Molecular Probes

One such application could serve as a useful and more cost-effective assay鈥攐r test鈥攆or biologists and biochemists in their experiments. The laser photoacoustic spectrometers they currently use are a rather expensive way to detect ethylene in mammals.

鈥淭here are only a handful of these in the world,鈥 Michel says. 鈥淚f we can make a molecule or a couple of molecules that we can ship in a little vial to people, and anybody can run these assays in their labs, then we can potentially start answering more questions about any roles ethylene has in biological systems.鈥

Michel鈥檚 new NIH grant funds the broad sweep of his lab鈥檚 research. This includes developing ethylene detection tools based on organometallic reactions. 鈥淭he way we go about doing it is unique compared to how other people develop probe-type molecules,鈥 he says.

Michel first heard of work in this field as an undergraduate, when was awarded 鈥渇or the development of the metathesis method in organic synthesis.鈥 Metathesis is often described as a way that atoms 鈥渆xchange dance partners鈥 to form new molecules.

Nearly 20 years later, Michel uses metathesis for entirely new applications. This builds on his PhD background in traditional catalysis 鈥 methods for speeding chemical reaction rates.听Then, as a postdoctoral scientist, he did similar work using palladium to detect carbon monoxide in cells.

As an independent research scientist, Michel learned of the need to find a better way to detect ethylene. His group has developed an array of probes since publishing its first paper in this field in 2018.

Brian Michel
Brian Michel

鈥淲e鈥檙e always looking to do new things with them. Some of the new things are just steady, systematic improvements,鈥 he says. 鈥淲e also think about how we can take fundamentally different approaches. Is there a different way we can look at the detection systems that might have its own issues but might offer other unique advantages?鈥

As Michel began exploring ideas about how to detect ethylene, he noticed that smaller alkenes鈥攁 class of hydrocarbons also known as olefins鈥攇enerally react faster than larger alkenes. As the smallest possible alkene, ethylene reacts quite quickly.

Many scientists view ethylene as a problem in olefin metathesis but, Michel says, 鈥淲e鈥檝e found a way to take advantage of how it reacts a bit differently than some other molecules around it due to its small size.鈥

In developing his probes, Michel applies chemical reactions that operate separately from those used by mammalian systems, yet do not affect their cells. This growing field goes by names such as 鈥渘ew-to-nature organic reactions,鈥 鈥渃hemical biology,鈥 or 鈥渄eveloping chemical tools to study biological systems.鈥

鈥淭he reason we do this is that the molecules we鈥檙e trying to detect 鈥 aren鈥檛 reactive enough to react with other organic molecules by themselves,鈥 he explains.

A group of chemical elements called transition metals can help. The human body contains various transition metals, including copper, manganese and iron that perform important functions. Iron, for example, transports oxygen.

鈥淭ransition metals have some additional bonding interactions with these small molecules that allow for chemistry to occur that doesn鈥檛 happen already in biological systems,鈥 he says.

Striving for the perfect system looms as a constant challenge for Michel鈥檚 group. 鈥淲hy is this one thing not quite fast enough? How do we make it faster? Why do we not get quite as much signal here?鈥

And troubleshooting the issues that arise with a highly sensitive detection system brings its own challenges, Michel says. 鈥淚t鈥檚 getting so sensitive that finding what鈥檚 causing things to go wrong becomes harder and harder.鈥